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Information: motif-x (short for motif extractor) is a software tool designed to extract overrepresented patterns from any sequence data set. The algorithm is an iterative strategy which builds successive motifs through comparison to a dynamic statistical background. Reference: Schwartz, D. & Gygi, SP (2005). An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets. Nature Biotechnology 23(11):1391-1398. Abstract | PDF (728K) | Supplementary Information | PubMed | ||
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Information: scan-x is a software tool designed to find motifs (identified using motif-x) within any sequence data set. The first large scale scan was performed using all available human, mouse, fly and yeast phosphorylation and acetylation data to perform a scan for undiscovered sites. Reference: Schwartz D, Chou MF, Church GM (2009). Predicting protein post-translational modifications using meta-analysis of proteome-scale data sets. Mol Cell Proteomics 8(2):365-79. Abstract | PDF | Free Full-Text | Supplemental Data | PubMed Feedback: Suggestions are always welcomed. Please e-mail Daniel Schwartz at dschwartz (at) hms.harvard.edu. Disclaimer: The software provided on this website may be used freely by users from academic and non-profit organizations. Users from the commercial sector should contact Daniel Schwartz (dschwartz(at)hms.harvard.edu). | ||
| website created by Michael Chou and Daniel Schwartz (Church Lab) © 2005-2008 The President and Fellows of Harvard College. |
